Fundamental Aspects of Single Molecule and Zeptomole Electroanalysis

Using the principles of electro-analytical chemistry to detect target molecules at very low concentration with high specificity, simplicity, and low power.

The objective of this research program was to provide the fundamental understanding required for using the principles of electroanalytical chemistry to detect target molecules at very low concentration, including single molecules, with high specificity, simplicity, and low power.

A probe DNA sequence (red) immobilized onto a nanoscale magnetic particle is mixed with a label sequence (blue) modified with an electrocatalyst, such as a Pt nanoparticle. In the presence of the target sequence (green), a sandwich complex forms. Application of a magnetic field in the vicinity of the electrode results in concentration of the complex onto the electrode surface. When an appropriate potential is applied to the electrode, an electrocatalytic reaction occurs (here shown as hydrazine oxidation)

Attainment of this objective required fundamental investigations of reaction kinetics, catalytic activity, nanoparticle synthesis, adsorption, and signal enhancement at surfaces. The results of this study lay the groundwork necessary for detecting and responding to the presence of low levels of CB (chemical, biological) agents.

Additionally, investigations of single electrochemical events have allowed researchers to uncover phenomena and properties that are not apparent by studying processes involving large numbers of molecules, as is typical in conventional electrochemical experiments in which an ensemble average of the data is treated.

The approach in this project has been to use a novel electrochemical method to greatly amplify the presence of specific molecules or classes of molecules. The project is based on results demonstrating the detection of individual collisions between catalytic nanoparticles and electrodes, a process called “electrocatalytic amplification” (ECA). The project also relied on a high degree of expertise with the following:

  1. Synthesis of nanoparticles having well-defined sizes, compositions, and structures that result in tailored catalytic and magnetic functions;

  2. Functionalization of electrodes and nanoparticles with biological probes such as DNA and proteins;

  3. New concepts in microfluidic design for manipulating very small amounts of solution and capturing small numbers of labeled targets; and

  4. Fabrication of nanoscale electrodes having dimensions that are on the same size scale (~ 3 nm) as the catalytic labels used to signal the presence of individual molecules.

The approach to the problem is illustrated in above. Here, a target DNA sequence (shown in green) is detected when it switches on an electrochemical reaction. An approach similar to that shown in the figure was used to detect single catalytic particles and demonstrated that amplification factors as high as 109 can be achieved. Note that although it was decided to illustrate DNA detection as a model analyte in the figure, the basic approach is also applicable to proteins and small-molecules.

This work was done by Richard M. Crooks, Allen J. Bard, and Keith J. Stevenson of The University of Texas at Austin; and Bo Zhang of the University of Washington for the Defense Threat Reduction Agency. DTRA-0009



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Fundamental Aspects of Single Molecule and Zeptomole Electroanalysis

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Aerospace & Defense Technology Magazine

This article first appeared in the October, 2018 issue of Aerospace & Defense Technology Magazine (Vol. 3 No. 6).

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Overview

The document is a final technical report detailing research conducted by a team from The University of Texas at Austin, led by Principal Investigator Richard M. Crooks, with co-investigators Allen J. Bard, Keith Stevenson, and Bo Zhang from the University of Washington. The research, funded under Grant/Award #: HDTRA1-11-1-0005, spans from August 8, 2011, to June 1, 2017, and focuses on the fundamental aspects of single molecule and zeptomole electroanalysis.

The primary objective of the research was to enhance the understanding of electroanalytical chemistry principles to detect target molecules at extremely low concentrations, including single molecules. This goal necessitated in-depth investigations into various aspects such as reaction kinetics, catalytic activity, nanoparticle synthesis, adsorption, and signal enhancement at surfaces. The findings from this research are intended to lay the groundwork for detecting and responding to low levels of chemical and biological agents, particularly concerning chemical warfare (CB) agents.

The report emphasizes the innovative electrochemical methods developed during the study, which significantly amplify the detection of specific molecules or classes of molecules. By focusing on single electrochemical events, the researchers uncovered phenomena and properties that are often obscured in traditional electrochemical experiments that analyze large ensembles of molecules. This approach allows for a more nuanced understanding of molecular behavior and interactions.

Additionally, the report includes specific experimental methodologies, such as the use of Exonuclease I (Exo I) and Duplex Specific Nuclease (DSN) in conjunction with platinum nanoparticle (PtNP) conjugates, to study the interactions of microRNA (miRNA) solutions. These experiments were conducted under controlled conditions, with precise temperature and mixing protocols to ensure accurate results.

Overall, the report provides a comprehensive overview of the advancements made in the field of electroanalysis, highlighting the potential applications of these techniques in various scientific and security-related fields. The research not only contributes to the academic understanding of electrochemical processes but also has practical implications for the detection of hazardous substances at low concentrations. The findings are significant for future developments in analytical chemistry and related disciplines.